Biological carbon fixation: a thermodynamic perspective

Thermodynamic constraints shape the structure of carbon fixation pathways.

Thermodynamics impose a major constraint on the structure of metabolic pathways. Here, we use carbon fixation pathways to demonstrate how thermodynamics shape the structure of pathways and determine the cellular resources they consume. We analyze the energetic profile of prototypical reactions and show that each reaction type displays a characteristic change in Gibbs energy. Specifically, altho...

The Emergence and Early Evolution of Biological Carbon-Fixation

The fixation of CO₂ into living matter sustains all life on Earth, and embeds the biosphere within geochemistry. The six known chemical pathways used by extant organisms for this function are recognized to have overlaps, but their evolution is incompletely understood. Here we reconstruct the complete early evolutionary history of biological carbon-fixation, relating all modern pathways to a sin...

Carbon Fixation

Entanglement and intra-molecular cooling in biological systems? - A quantum thermodynamic perspective

We discuss the possibility of existence of entanglement in biological systems. Our arguments centre on the fact that biological systems are thermodynamic open driven systems far from equilibrium. In such systems error correction can occur which may maintain entanglement despite high levels of de-coherence. We also discuss the possibility of cooling (classical or quantum) at molecular level.

A thermodynamic perspective of immune capabilities.

We consider the mutual interactions, via cytokine exchanges, among helper lymphocytes, B lymphocytes and killer lymphocytes, and we model them as a unique system by means of a tripartite network. Each part includes all the different clones of the same lymphatic subpopulation, whose couplings to the others are either excitatory or inhibitory (mirroring elicitation and suppression by cytokine). F...